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Comprehensive profiling of EBV gene expression in nasopharyngeal carcinoma through paired-end transcriptomesequencing

Lijuan Hu,Zhirui Lin,Yanheng Wu,Juqin Dong,Bo Zhao,Yanbing Cheng,Peiyu Huang,Lihua Xu,Tianliang Xia,Dan Xiong,Hongbo Wang,Manzhi Li,Ling Guo,Elliott Kieff,Yixin Zeng,Qian Zhong,Musheng Zeng

Frontiers of Medicine 2016, Volume 10, Issue 1,   Pages 61-75 doi: 10.1007/s11684-016-0436-0

Abstract: However, comprehensive information through EBV transcriptome analysis in NPC is limited.We performed paired-end RNA-seq to systematically and comprehensively characterize the expression of

Keywords： Epstein-Barr virus     paired-end transcriptome sequencing     latency genes     lytic genes     nasopharyngeal carcinoma    

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TCGA whole-transcriptome sequencing data reveals significantly dysregulated genes and signaling pathways

Daniel Wai-Hung Ho,Alan Ka-Lun Kai,Irene Oi-Lin Ng

Frontiers of Medicine 2015, Volume 9, Issue 3,   Pages 322-330 doi: 10.1007/s11684-015-0408-9

Abstract:

This study systematically evaluates the TCGA whole-transcriptome sequencing data of hepatocellular

Keywords： TCGA     whole-transcriptome sequencing     HCC     liver cancer    

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Exploring the cancer genome in the era of next-generation sequencing

Hui Dong, Shengyue Wang

Frontiers of Medicine 2012, Volume 6, Issue 1,   Pages 48-55 doi: 10.1007/s11684-012-0182-x

Abstract:

The emergence of next-generation sequencing technologies has led to dramatic advances in cancer genomeThe increased efficiency and resolution of next-generation sequencing greatly facilitate the detectionComprehensive analysis of cancer genomes through approaches of whole genome, exome, and transcriptomesequencing has significantly improved the understanding of cancer biology, diagnosis, and therapy.The present study briefly reviews the recent pioneering studies on cancer genome sequencing and provides

Keywords： next-generation sequencing     cancer genome     whole genome sequencing     exome     transcriptome    

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Transcriptome resources and genome-wide marker development for Japanese larch (

Wanfeng LI,Suying HAN,Liwang QI,Shougong ZHANG

Frontiers of Agricultural Science and Engineering 2014, Volume 1, Issue 1,   Pages 77-84 doi: 10.15302/J-FASE-2014010

Abstract: In this paper, we present a transcriptome analysis of , a deciduous conifer that is widely-grown inUsing high-throughput RNA sequencing, we obtained about 26 million reads from the stems of 1-, 2-, 5-Combining these with the published Roche 454 sequencing reads and the expressed sequence tags (both mainly

Keywords： Larix     transcriptome     age     wood formation     somatic embryogenesis     molecular marker    

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Topology-independent end-to-end learning model for improving the voltage profile in microgrids-integrated

Frontiers in Energy 2023, Volume 17, Issue 2,   Pages 211-227 doi: 10.1007/s11708-022-0847-3

Abstract: studies that realize topology identification and decision-making optimization in sequence, the proposed end-to-endIn particular, the generator in SCAN is trained by the core modules in sequence so as to form an end-to-end

Keywords： end-to-end learning     microgrids     voltage profile improvement     generative adversarial network    

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clear-cell renal cell carcinoma: a multi-center integrated analysis of microbiome, metabolome, and transcriptome

Frontiers of Medicine doi: 10.1007/s11684-023-1029-3

Abstract: clear-cell renal cell carcinoma: a multi-center integrated analysis of microbiome, metabolome, and transcriptome

Keywords： tumor prognosis molecular     Microbiome subsets determine     center analysis microbiome     transcriptome data    

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METABOLIC AND TRANSCRIPTOME ANALYSIS REVEALS METABOLITE VARIATION AND FLAVONOID REGULATORY NETWORKS IN

Frontiers of Agricultural Science and Engineering 2021, Volume 8, Issue 2,

Abstract: We focused on the metabolites and key genes in the phenylpropanoid/flavonoid pathway integrated with transcriptome
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Comparative transcriptome analysis of purple-fleshed sweet potato provides insights into the molecular

Hongyuan ZHAO, Shanshan ZHANG, Feibing WANG, Ning ZHAO, Shaozhen HE, Qingchang LIU, Hong ZHAI

Frontiers of Agricultural Science and Engineering 2018, Volume 5, Issue 2,   Pages 214-225 doi: 10.15302/J-FASE-2018219

Abstract: Jingshu 6 and its mutant JS6-5 with high anthocyanin content by high-throughput RNA sequencing.

Keywords： anthocyanin     gene expression     mutant     purple-fleshed sweet potato     transcriptome    

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Exome sequencing greatly expedites the progressive research of Mendelian diseases

Xuejun Zhang

Frontiers of Medicine 2014, Volume 8, Issue 1,   Pages 42-57 doi: 10.1007/s11684-014-0303-9

Abstract:

The advent of whole-exome sequencing (WES) has facilitated the discovery of rare structure and functionalCombining exome sequencing with linkage studies is one of the most efficient strategies in searchingWe illustrate the workflow of exome capture and sequencing to highlight the advantages of WES.

Keywords： genetics     whole-exome sequencing     Mendelian disease     disease gene    

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Monocytes Associated with Severe COVID-19 in the PBMCs of Severely Infected Patients Through Single-Cell TranscriptomeSequencing Article

Yan Zhang, Shuting Wang, He Xia, Jing Guo, Kangxin He, Chenjie Huang, Rui Luo, Yanfei Chen, Kaijin Xu, Hainv Gao, Jifang Sheng, Lanjuan Li

Engineering 2022, Volume 17, Issue 10,   Pages 161-169 doi: 10.1016/j.eng.2021.05.009

Abstract: In this study, we performed single-cell transcriptomic sequencing of peripheral blood samples collected

Keywords： COVID-19     Severe infection     Critically ill     Monocytes     Fibrosis    

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Efficient decoding self-attention for end-to-end speech synthesis Research Article

Wei ZHAO, Li XU

Frontiers of Information Technology & Electronic Engineering 2022, Volume 23, Issue 7,   Pages 1127-1138 doi: 10.1631/FITEE.2100501

Abstract: has been innovatively applied to text-to-speech (TTS) because of its parallel structure and superior strength in modeling sequential data. However, when used in with an autoregressive decoding scheme, its inference speed becomes relatively low due to the quadratic complexity in sequence length. This problem becomes particularly severe on devices without graphics processing units (GPUs). To alleviate the dilemma, we propose an (EDSA) module as an alternative. Combined with a dynamic programming decoding procedure, TTS model inference can be effectively accelerated to have a linear computation complexity. We conduct studies on Mandarin and English datasets and find that our proposed model with EDSA can achieve 720% and 50% higher inference speed on the central processing unit (CPU) and GPU respectively, with almost the same performance. Thus, this method may make the deployment of such models easier when there are limited GPU resources. In addition, our model may perform better than the baseline Transformer TTS on out-of-domain utterances.

Keywords： Efficient decoding     End-to-end     Self-attention     Speech synthesis    

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Accurate quantification of 3′-terminal 2′-O-methylated small RNAs by utilizing oxidative deep sequencing

Frontiers of Medicine 2022, Volume 16, Issue 2,   Pages 240-250 doi: 10.1007/s11684-021-0909-7

Abstract: , we profiled 3′-terminal 2′-O-methyl plant miRNAs in the livers of rice-fed mice by oxidative deep sequencing

Keywords： small RNAs     2′-O-methylation     sequencing     RT-qPCR    

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Comparison on End-of-Life strategies of WEEE in China based on LCA

Bin Lu, Xiaolong Song, Jianxin Yang, Dong Yang

Frontiers of Environmental Science & Engineering 2017, Volume 11, Issue 5, doi: 10.1007/s11783-017-0994-7

Abstract: It becomes an urgent issue to develop and adopt an effective End-of-Life (EoL) strategy for EEE in order

Keywords： End-of-Life     Waste electrical and electronic equipment     Life cycle assessment     Reuse    

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Development and application of high-end aerospace MEMS

Weizheng YUAN

Frontiers of Mechanical Engineering 2017, Volume 12, Issue 4,   Pages 567-573 doi: 10.1007/s11465-017-0424-3

Abstract:

This paper introduces the design and manufacturing technology of aerospace microelectromechanical systems (MEMS) characterized by high performance, multi-variety, and small batch. Moreover, several kinds of special MEMS devices with high precision, high reliability, and environmental adaptability, as well as their typical applications in the fields of aeronautics and aerospace, are presented.

Keywords： MEMS     design and manufacture technology     aeronautic and aerospace    

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End-to-end delay analysis for networked systems

Jie SHEN,Wen-bo HE,Xue LIU,Zhi-bo WANG,Zhi WANG,Jian-guo YAO

Frontiers of Information Technology & Electronic Engineering 2015, Volume 16, Issue 9,   Pages 732-743 doi: 10.1631/FITEE.1400414

Abstract: End-to-end delay measurement has been an essential element in the deployment of real-time services inWe propose a novel theoretical framework to analyze the end-to-end delay distributions of networked systemsWe use a signal flow graph to model the delay distribution of a networked system and prove that the end-to-endBy analyzing the time responses of the transfer function, we obtain the end-to-end delay distribution

Keywords： Networked system     End-to-end     Delay distribution    

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Title Author Date Type Operation

Comprehensive profiling of EBV gene expression in nasopharyngeal carcinoma through paired-end transcriptomesequencing

Lijuan Hu,Zhirui Lin,Yanheng Wu,Juqin Dong,Bo Zhao,Yanbing Cheng,Peiyu Huang,Lihua Xu,Tianliang Xia,Dan Xiong,Hongbo Wang,Manzhi Li,Ling Guo,Elliott Kieff,Yixin Zeng,Qian Zhong,Musheng Zeng

Journal Article

TCGA whole-transcriptome sequencing data reveals significantly dysregulated genes and signaling pathways

Daniel Wai-Hung Ho,Alan Ka-Lun Kai,Irene Oi-Lin Ng

Journal Article

Exploring the cancer genome in the era of next-generation sequencing

Hui Dong, Shengyue Wang

Journal Article

Transcriptome resources and genome-wide marker development for Japanese larch (

Wanfeng LI,Suying HAN,Liwang QI,Shougong ZHANG

Journal Article

Topology-independent end-to-end learning model for improving the voltage profile in microgrids-integrated

Journal Article

clear-cell renal cell carcinoma: a multi-center integrated analysis of microbiome, metabolome, and transcriptome

Journal Article

METABOLIC AND TRANSCRIPTOME ANALYSIS REVEALS METABOLITE VARIATION AND FLAVONOID REGULATORY NETWORKS IN

Journal Article

Comparative transcriptome analysis of purple-fleshed sweet potato provides insights into the molecular

Hongyuan ZHAO, Shanshan ZHANG, Feibing WANG, Ning ZHAO, Shaozhen HE, Qingchang LIU, Hong ZHAI

Journal Article

Exome sequencing greatly expedites the progressive research of Mendelian diseases

Xuejun Zhang

Journal Article

Monocytes Associated with Severe COVID-19 in the PBMCs of Severely Infected Patients Through Single-Cell TranscriptomeSequencing

Yan Zhang, Shuting Wang, He Xia, Jing Guo, Kangxin He, Chenjie Huang, Rui Luo, Yanfei Chen, Kaijin Xu, Hainv Gao, Jifang Sheng, Lanjuan Li

Journal Article

Efficient decoding self-attention for end-to-end speech synthesis

Wei ZHAO, Li XU

Journal Article

Accurate quantification of 3′-terminal 2′-O-methylated small RNAs by utilizing oxidative deep sequencing

Journal Article

Comparison on End-of-Life strategies of WEEE in China based on LCA

Bin Lu, Xiaolong Song, Jianxin Yang, Dong Yang

Journal Article

Development and application of high-end aerospace MEMS

Weizheng YUAN

Journal Article

End-to-end delay analysis for networked systems

Jie SHEN,Wen-bo HE,Xue LIU,Zhi-bo WANG,Zhi WANG,Jian-guo YAO

Journal Article